AQC Batch Fields urn:lsid:${LSIDAuthority}:AssayDomain-Batch.Folder-${Container.RowId}:AQC The user is prompted for batch properties once for each set of runs they import. The batch is a convenience to let users set properties that seldom change in one place and import many runs using them. This is the first step of the import process. urn:lsid:${LSIDAuthority}:AssayDomain-Batch.Folder-${Container.RowId}:AQC#TargetStudy TargetStudy false false true true true http://www.w3.org/2001/XMLSchema#string Target Study Study study false FixedValue 3e7446b6-470b-102c-94f8-d0cf3797317a AQC Result Fields urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC The user is prompted to enter data values for row of data associated with a run, typically done as uploading a file. This is part of the second step of the upload process. urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#SampleNum SampleNum Sample number false false true true true http://www.w3.org/2001/XMLSchema#string Sample Number false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#ParticipantID ParticipantID Used with either VisitID or Date to identify subject and timepoint for assay. false false true true true http://www.w3.org/2001/XMLSchema#string Participant ID false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#VisitID VisitID Used with ParticipantID to identify subject and timepoint for assay. false false true true true http://www.w3.org/2001/XMLSchema#double Visit ID false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#Date Date Please ignore this column. Not for use with this assay. false true false false false http://www.w3.org/2001/XMLSchema#dateTime Date false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#SpecimenIDs SpecimenIDs When a matching specimen exists in a study, can be used to identify subject and timepoint for assay. false false true true true http://www.w3.org/2001/XMLSchema#string Specimen IDs false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#PoolID PoolID Unique identifier for each pool of specimens false false true true true http://www.w3.org/2001/XMLSchema#string Pool ID false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#TotalCells TotalCells Total cell count false false true true true http://www.w3.org/2001/XMLSchema#double Total Cells 0.###E0 false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#ViableCells ViableCells Total viable cell count false false true true true http://www.w3.org/2001/XMLSchema#double Viable Cells 0.###E0 false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#Original Original Original cell count (sum of specimen vials original cell count) false false true true true http://www.w3.org/2001/XMLSchema#double Original Cells 0.###E0 false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#Viability Viability Percent viable cell count false false true true true http://www.w3.org/2001/XMLSchema#double Viability ##.##% false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#Recovery Recovery Percent recovered cell count (viable cells / (sum of specimen vials original cell count) false false true true true http://www.w3.org/2001/XMLSchema#double Recovery ##.##% false LastEntered urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#Questionable Unreliable false false true true true http://www.w3.org/2001/XMLSchema#boolean Unreliable? false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC#CellsRemoved CellsRemoved false false true true true http://www.w3.org/2001/XMLSchema#double Number of Cells removed prior to Day 2 count? false EditableDefault AQC Run Fields urn:lsid:${LSIDAuthority}:AssayDomain-Run.Folder-${Container.RowId}:AQC The user is prompted to enter run level properties for each file they import. This is the second step of the import process. urn:lsid:${LSIDAuthority}:AssayDomain-Run.Folder-${Container.RowId}:AQC#Date Date Date the assay was run. If not manually entered, the date will be read from the guava assay file. false false true true true http://www.w3.org/2001/XMLSchema#dateTime Date false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Run.Folder-${Container.RowId}:AQC#Day Day true false true true true http://www.w3.org/2001/XMLSchema#string Day Day lists false EditableDefault urn:lsid:${LSIDAuthority}:AssayDomain-Run.Folder-${Container.RowId}:AQC#LabID LabID false false true true true http://www.w3.org/2001/XMLSchema#string Lab ID EQC Lab ID lists false LastEntered AQC Viability data for all vials used in HVTN Assays ExperimentRun 1 1 Material Data ${RunLSIDBase}:SimpleProtocol.InputStep AQC Protocol false urn:lsid:${LSIDAuthority}:AssayDomain-Batch.Folder-${Container.RowId}:AQC urn:lsid:${LSIDAuthority}:AssayDomain-Data.Folder-${Container.RowId}:AQC false false false urn:lsid:${LSIDAuthority}:AssayDomain-Run.Folder-${Container.RowId}:AQC AQC - Core ProtocolApplication Material Data ${RunLSIDBase}:SimpleProtocol.CoreStep AQC AQC - Output ExperimentRunOutput Material Data ${RunLSIDBase}:SimpleProtocol.OutputStep AQC output